Data

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Fusion Gene Study-NGS Data


Big Data

Illumina Body Map (2010) : http://www.ebi.ac.uk/arrayexpress/experiments/E-MTAB-513/samples/?s_page=1&s_pagesize=500

BRCA1-mutated breast cancers (2011): http://www.ebi.ac.uk/ena/data/view/SRP008746

2014

SRP008746 (SRX099961.../SRR350976...)
Identification of gene fusion transcripts by transcriptome sequencing in BRCA1-mutated breast cancers and cell lines
SRP043081
nine synthetic poly-adenylated RNA transcripts :Submitted by BIOPROJECT on 09-OCT-2014
SRP050223 (SRX767300~312||SRR1661716~2117)
Characterization of a network of tumor suppressor microRNA's in T Cell acute lymphoblastic leukemia

2010

SRP003186
Identification of fusion genes in breast cancer by paired-end RNA-sequencing : Institute for Molecular Medicine Finland, Universi: Breast cancer fusion genes

sra046769 ftp://ftp.ddbj.nig.ac.jp/ddbj_database/dra/fastq/SRA046/SRA046769/SRX099961/SRR350976.fastq.bz2

ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR350/SRR350976/SRR350976.fastq.gz

ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR030/ERR030893/ERR030893.fastq.gz

ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR030/ERR030893/ERR030893.fastq.gz ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR030/ERR030874/ERR030874_1.fastq.gz ftp://ftp.sra.ebi.ac.uk/vol1/fastq/ERR030/ERR030871/ERR030871.fastq.gz

StudyA: SRP008746

• A_1: Breast Cancer (HCC1937), SRX099961, SRR350976


• A_2: Breast Cancer (HCC3153), SRX101334, SRR353604_1


• A_3: Breast Cancer (SUM131502), SRX101335, SRR353948_1


• A_4: Normal (MCF10A), SRX099963, SRR353603_1


• A_5: Normal (HCC2337), SRX101336, SRR353602_1


StudyB: SRP006726

• B_1: Breast Cancer (HCC1954), SRX061997, SRR201983


• B_2: Normal (HMEC), SRX061998, SRR201986


StudyC: SRP005601

• C_1: Breast Cancer (BT20), SRX040501, SRR097786_1


• C_2: Breast Cancer (BT474), SRX040502, SRR097787_1


• C_3: Breast Cancer (MCF7), SRX040504, SRR097789_1


• C_4: Breast Cancer (MDAMB231), SRX040505, SRR097790_1


• C_5: Breast Cancer (MDAMB468), SRX040506, SRR097791_1


• C_6: Breast Cancer (T47D), SRX040507, SRR097792_1


• C_7: Breast Cancer (ZR751), SRX040508, SRR097793_1


• C_8: Normal (MCF10A), SRX040503, SRR097788_1


StudyD: ERP000992

• D_1: Breast Cancer (MCF7), ERX030989, ERR053953


• D_2: Breast Cancer (T47D), ERX031000, ERR053958


• D_3: Normal (Ishikawa), ERX030994, ERR053948

ftp://ftp.ddbj.nig.ac.jp/ddbj_database/dra/sralite/ByExp/litesra/SRX/SRX765/SRX765626/SRR1659951/SRR1659951.sra

Cancer

CancerRNASeqList NGS Data